JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A42_chr7_144223244_144244605	0/0	t0018	4014	2	0	0	2	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0019	4015	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0020	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0021	4011	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0022	4008	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0023	4018	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0024	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0025	4007	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0026	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0027	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0028	4015	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0029	4011	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0030	4004	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0031	4006	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0032	4012	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0033	4008	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0034	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0035	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0036	4020	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0037	4006	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0038	4012	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0039	4012	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0040	4005	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0041	4006	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0042	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0043	4010	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0044	4010	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0045	4010	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0046	4010	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0047	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0048	4012	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0049	4012	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0050	4012	1	0	0	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0051	4012	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0052	4007	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0053	4008	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0054	4008	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0055	4012	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0056	4012	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0057	4008	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0058	4012	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0059	4012	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0060	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0061	4011	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0062	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0063	4008	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0064	4010	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0065	4014	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0066	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0067	4017	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605