JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A42_chr7_144223244_144244605	0/0	t0068	4016	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0069	4017	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0070	4014	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0071	4012	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0072	4010	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0073	4015	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0074	4006	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0075	4006	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0076	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0077	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0078	4006	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0079	4009	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0080	4016	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0081	4008	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0082	4010	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0083	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0084	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0085	4011	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0086	4011	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0087	4012	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0088	4011	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0089	4010	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0090	4014	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0091	4011	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0092	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0093	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0094	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0095	4014	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0096	4011	1	0	0	0	1	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0097	4011	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0098	4014	1	0	0	0	0	1	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0099	4011	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0100	4011	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0101	4015	1	0	1	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0102	4015	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0103	4018	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0104	4011	1	1	0	0	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0105	4016	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A42_chr7_144223244_144244605	0/0	t0106	4019	1	0	0	1	0	0	copy fasta	OR2A42	chr7	144223244	144244605
OR2A4_chr6_131694644_131706401	0/1	t0001	826	234	51	46	101	10	25	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0002	826	119	27	12	67	3	10	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0003	826	8	7	1	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0004	826	6	6	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0005	826	5	5	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0006	826	3	1	2	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0007	826	1	0	0	0	1	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0008	826	1	0	1	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0009	826	1	0	0	0	0	1	copy fasta	OR2A4	chr6	131694644	131706401
OR2A4_chr6_131694644_131706401	0/0	t0010	826	1	1	0	0	0	0	copy fasta	OR2A4	chr6	131694644	131706401
OR2A5_chr7_144043948_144063845	0/0	t0001	7746	80	2	17	51	5	5	copy fasta	OR2A5	chr7	144043948	144063845