JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A5_chr7_144043948_144063845	0/1	t0002	7746	62	3	5	47	3	3	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0003	7748	51	1	10	33	0	7	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0004	7748	34	17	9	1	1	6	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0005	7747	18	0	1	8	0	9	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0006	7749	16	0	8	8	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0007	7748	10	10	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0008	7748	9	9	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0009	7748	8	1	4	0	3	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	1/0	t0010	7746	8	0	3	1	2	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0011	7747	8	2	0	6	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0012	7749	5	1	3	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0013	7748	5	0	0	5	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0014	7749	5	5	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0015	7746	4	3	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0016	7750	3	3	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0017	7748	3	3	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0018	7748	3	3	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0019	7749	3	3	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0020	7746	3	2	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0021	7748	3	0	0	3	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0022	7746	3	0	0	0	0	3	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0023	7746	3	3	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0024	7746	2	2	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0025	7748	2	0	0	0	1	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0026	7747	2	2	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0027	7750	2	2	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0028	7746	2	2	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0029	7748	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0030	7747	2	0	1	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0031	7746	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0032	7745	2	1	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0033	7748	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0034	7746	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0035	7747	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0036	7745	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0037	7746	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0038	7746	2	0	0	2	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0039	7746	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0040	7747	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0041	7746	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0042	7748	1	0	0	0	0	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0043	7748	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0044	7748	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0045	7746	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0046	7748	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0047	7750	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0048	7750	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0049	7750	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0050	7751	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0051	7748	1	0	0	0	0	1	copy fasta	OR2A5	chr7	144043948	144063845