JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2A5_chr7_144043948_144063845	0/0	t0052	7748	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0053	7750	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0054	7747	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0055	7747	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0056	7748	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0057	7748	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0058	7748	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0059	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0060	7746	1	0	0	0	1	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0061	7747	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0062	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0063	7746	1	0	0	0	0	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0064	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0065	7746	1	0	0	0	0	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0066	7749	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0067	7748	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0068	7748	1	0	0	0	0	1	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0069	7747	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0070	7748	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0071	7745	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0072	7748	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0073	7734	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0074	7748	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0075	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0076	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0077	7746	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0078	7747	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0079	7745	1	0	0	1	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0080	7749	1	1	0	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A5_chr7_144043948_144063845	0/0	t0081	7749	1	0	1	0	0	0	copy fasta	OR2A5	chr7	144043948	144063845
OR2A7_chr7_144252663_144269792	0/0	t0001	1130	50	10	9	29	1	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0002	1130	46	13	4	22	3	4	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0003	1130	39	1	7	28	2	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0004	1130	15	2	3	1	2	7	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0005	1130	12	10	1	0	0	1	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0006	1130	9	0	0	9	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0007	1130	5	5	0	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0008	1130	1	1	0	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0009	1130	1	0	0	1	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0010	1130	1	0	0	1	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0011	1130	1	1	0	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0012	1130	1	1	0	0	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2A7_chr7_144252663_144269792	0/0	t0013	1130	1	0	0	1	0	0	copy fasta	OR2A7	chr7	144252663	144269792
OR2AG1_chr11_6778020_6796558	0/0	t0001	6039	53	12	7	22	1	11	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0002	6032	43	0	7	25	4	7	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0003	6041	41	2	3	30	0	6	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0004	6047	41	1	22	15	1	2	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0005	6028	30	0	0	30	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0006	6041	26	2	1	19	0	4	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0007	6043	21	0	8	8	0	5	copy fasta	OR2AG1	chr11	6778020	6796558