JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2AG1_chr11_6778020_6796558	0/0	t0008	6037	19	1	2	14	1	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0009	6043	12	1	0	8	0	3	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0010	6036	11	2	2	1	0	6	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0011	6051	11	1	2	6	2	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0012	6033	9	0	0	9	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0013	6045	7	0	3	4	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0014	6045	7	0	1	5	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0015	6049	6	5	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0016	6043	5	5	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0017	6049	4	0	0	4	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0018	6047	4	0	0	4	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0019	6040	3	1	0	2	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0020	6043	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0021	6043	3	0	1	0	2	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0022	6035	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/1	t0023	6055	3	0	0	2	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0024	6037	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0025	6041	3	3	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0026	6045	3	2	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0027	6035	3	2	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0028	6793	2	0	0	0	2	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0029	6032	2	0	2	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0030	6032	2	0	2	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0031	6044	2	0	2	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0032	6037	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	1/0	t0033	6043	2	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0034	6041	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0035	6047	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0036	6053	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0037	6042	2	1	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0038	6047	2	1	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0039	6039	2	0	0	2	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0040	6053	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0041	6043	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0042	6039	2	0	2	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0043	6039	2	0	2	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0044	6037	2	1	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0045	6045	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0046	6057	2	2	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0047	6796	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0048	6024	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0049	6028	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0050	6036	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0051	6037	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0052	6046	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0053	6042	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0054	6048	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0055	6044	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0056	6041	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0057	6041	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558