Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ASAH2B_chr10_50734936_50764255	0/0	t0026	4653	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0027	4663	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0028	4657	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0029	4657	2	1	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0030	4661	2	1	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0031	4661	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0032	4663	2	1	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0033	4667	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0034	4664	2	2	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0035	4657	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0036	4647	1	0	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0037	4663	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0038	4679	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0039	4671	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0040	4669	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0041	4669	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0042	4669	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0043	4669	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0044	4669	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0045	4669	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0046	4669	1	0	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0047	4669	1	0	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0048	4659	1	0	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0049	4671	1	0	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0050	4661	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0051	4661	1	0	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0052	4661	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0053	4661	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0054	4663	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0055	4653	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0056	4655	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0057	4655	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0058	4655	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0059	4655	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0060	4669	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0061	4657	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0062	4657	1	0	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0063	4659	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0064	4659	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0065	4661	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0066	4661	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0067	4663	1	0	0	0	1	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0068	4663	1	0	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0069	4663	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0070	4667	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0071	4667	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0072	4657	1	0	1	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0073	4669	1	0	0	1	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0074	4663	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	t0075	4663	1	1	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255