JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2AG1_chr11_6778020_6796558	0/0	t0058	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0059	6046	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0060	6039	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0061	6029	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0062	6037	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0063	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0064	6041	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0065	6049	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0066	6039	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0067	6047	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0068	6045	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0069	6041	1	0	0	0	1	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0070	6061	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0071	6042	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0072	6061	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0073	6029	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0074	6035	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0075	6043	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0076	6043	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0077	6035	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0078	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0079	6029	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0080	6043	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0081	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0082	6039	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0083	6045	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0084	6047	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0085	6067	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0086	6047	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0087	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0088	6047	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0089	6047	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0090	6039	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0091	6043	1	0	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0092	6027	1	0	0	1	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0093	6043	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0094	6041	1	0	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0095	6041	1	0	0	0	0	1	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0096	6049	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0097	6039	1	0	1	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0098	6041	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG1_chr11_6778020_6796558	0/0	t0099	6044	1	1	0	0	0	0	copy fasta	OR2AG1	chr11	6778020	6796558
OR2AG2_chr11_6760626_6776976	0/1	t0001	3274	112	16	15	70	4	6	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0002	3274	83	6	26	45	4	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0003	3274	74	9	12	40	5	8	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0004	3274	49	17	5	16	1	10	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0005	3274	29	9	2	16	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0006	3275	21	0	0	21	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0007	3274	17	1	8	0	1	7	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0008	3274	6	6	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976