JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2AG2_chr11_6760626_6776976	0/0	t0009	3274	6	0	0	6	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	1/0	t0010	3274	5	3	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0011	3270	5	4	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0012	3274	5	0	4	0	1	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0013	3274	4	4	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0014	3274	4	4	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0015	3274	3	3	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0016	3274	3	3	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0017	3274	3	0	0	0	0	3	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0018	3613	2	0	2	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0019	3275	2	0	0	2	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0020	3274	2	0	0	0	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0021	3274	2	0	0	0	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0022	3274	2	0	0	2	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0023	3274	2	0	0	2	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0024	3274	2	0	0	0	0	2	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0025	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0026	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0027	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0028	3274	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0029	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0030	3274	1	0	0	0	0	1	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0031	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0032	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0033	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0034	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0035	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0036	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0037	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0038	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0039	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0040	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0041	3274	1	0	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0042	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0043	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0044	3274	1	0	1	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0045	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0046	3274	1	0	0	1	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AG2_chr11_6760626_6776976	0/0	t0047	3274	1	1	0	0	0	0	copy fasta	OR2AG2	chr11	6760626	6776976
OR2AJ1_chr1_247919889_247940339	0/1	t0001	887	230	48	56	87	14	24	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	1/0	t0002	887	172	24	18	103	2	24	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0003	887	8	8	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0004	887	7	7	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0005	887	4	4	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0006	887	4	4	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0007	887	3	1	2	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0008	866	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0009	887	1	1	0	0	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0010	887	1	0	0	1	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339
OR2AJ1_chr1_247919889_247940339	0/0	t0011	887	1	0	0	1	0	0	copy fasta	OR2AJ1	chr1	247919889	247940339