JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2AK2_chr1_247960233_247971386	1/1	t0001	192	432	96	82	192	18	42	copy fasta	OR2AK2	chr1	247960233	247971386
OR2AP1_chr12_55567468_55580612	0/1	t0001	619	285	76	30	151	4	23	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	1/0	t0002	619	174	12	49	77	14	21	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0003	619	6	6	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0004	619	5	0	0	5	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0005	619	3	1	0	1	0	1	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0006	619	2	2	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0007	619	1	1	0	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0008	619	1	0	0	0	0	1	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AP1_chr12_55567468_55580612	0/0	t0009	619	1	0	1	0	0	0	copy fasta	OR2AP1	chr12	55567468	55580612
OR2AT4_chr11_75076753_75101876	0/0	t0001	7698	92	1	9	73	5	4	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0002	7699	81	8	17	48	3	5	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	1/1	t0003	7699	80	6	19	32	5	16	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0004	7699	33	0	2	25	1	5	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0005	7699	20	10	2	4	2	2	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0006	7699	10	10	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0007	7696	10	10	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0008	7696	9	9	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0009	7699	8	4	3	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0010	7696	7	7	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0011	7699	7	6	1	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0012	7699	5	1	4	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0013	7699	4	4	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0014	7699	3	0	0	0	0	3	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0015	7699	3	0	0	3	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0016	7695	3	3	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0017	7695	3	3	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0018	7698	2	2	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0019	7698	2	0	2	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0020	7699	2	0	0	2	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0021	7698	2	2	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0022	7696	2	2	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0023	7699	1	0	1	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0024	7699	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0025	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0026	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0027	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0028	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0029	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0030	7698	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0031	7698	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0032	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0033	7699	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0034	7699	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0035	7699	1	0	0	0	0	1	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0036	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0037	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0038	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0039	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0040	7696	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876