JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2AT4_chr11_75076753_75101876	0/0	t0041	7695	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0042	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0043	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0044	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0045	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0046	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0047	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0048	7699	1	1	0	0	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0049	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2AT4_chr11_75076753_75101876	0/0	t0050	7699	1	0	0	1	0	0	copy fasta	OR2AT4	chr11	75076753	75101876
OR2B11_chr1_247444182_247463104	0/0	t0001	5398	82	4	20	49	3	6	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0002	5398	38	8	8	13	0	9	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0003	5398	38	0	1	30	4	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0004	5398	24	1	1	15	1	6	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0005	5397	13	1	1	9	1	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0006	5398	11	0	0	10	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0007	5398	9	0	1	5	0	3	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0008	5398	8	7	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0009	5398	8	4	2	0	2	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0010	5398	8	0	0	6	0	2	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0011	5398	7	0	0	7	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0012	5398	7	0	0	7	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0013	5398	7	7	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0014	5398	6	0	0	5	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0015	5398	6	0	0	6	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0016	5398	5	0	0	4	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0017	5400	4	0	3	0	1	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0018	5398	4	1	3	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0019	5398	4	4	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0020	5397	3	0	0	3	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0021	5397	3	0	0	3	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0022	5400	3	0	3	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0023	5400	3	0	2	0	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0024	5398	3	0	3	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0025	5398	3	3	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0026	5398	3	0	3	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0027	5398	2	0	0	2	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0028	5398	2	0	0	1	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0029	5400	2	0	0	1	0	1	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0030	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0031	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0032	5397	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0033	5397	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0034	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0035	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0036	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0037	5398	2	0	0	2	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0038	5398	2	0	0	2	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0039	5398	2	2	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0040	5398	2	0	0	0	2	0	copy fasta	OR2B11	chr1	247444182	247463104