JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2B11_chr1_247444182_247463104	0/0	t0141	5397	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0142	5398	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0143	5398	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0144	5397	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0145	5396	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0146	5398	1	0	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0147	5398	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0148	5398	1	0	0	1	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0149	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0150	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0151	5398	1	0	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0152	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0153	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0154	5397	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0155	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0156	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0157	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0158	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0159	5397	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0160	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0161	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0162	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0163	5398	1	1	0	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B11_chr1_247444182_247463104	0/0	t0164	5398	1	0	1	0	0	0	copy fasta	OR2B11	chr1	247444182	247463104
OR2B2_chr6_27906185_27917396	1/1	t0001	139	395	94	78	166	14	41	copy fasta	OR2B2	chr6	27906185	27917396
OR2B2_chr6_27906185_27917396	0/0	t0002	139	3	0	0	0	0	3	copy fasta	OR2B2	chr6	27906185	27917396
OR2B3_chr6_29081208_29092313	0/1	t0001	165	364	82	66	169	14	32	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	t0002	165	36	8	5	15	0	8	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	t0003	165	8	5	3	0	0	0	copy fasta	OR2B3	chr6	29081208	29092313
OR2B3_chr6_29081208_29092313	0/0	t0004	165	1	1	0	0	0	0	copy fasta	OR2B3	chr6	29081208	29092313
OR2C1_chr16_3350889_3362306	0/1	t0001	480	245	29	46	137	7	25	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	1/0	t0002	480	166	53	32	56	7	17	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	t0003	480	18	14	1	1	0	2	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	t0004	480	2	1	1	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C1_chr16_3350889_3362306	0/0	t0005	480	1	1	0	0	0	0	copy fasta	OR2C1	chr16	3350889	3362306
OR2C3_chr1_247519677_247541440	0/1	t0001	7571	88	3	11	64	2	7	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0002	7573	54	5	4	36	3	6	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0003	7572	51	6	7	33	1	4	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0004	7573	18	0	2	15	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0005	7572	15	1	4	8	0	2	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0006	7573	12	3	2	0	0	7	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0007	7544	11	2	1	5	1	2	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0008	7572	10	1	0	9	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0009	7574	9	1	2	0	1	5	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0010	7574	8	1	3	3	1	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0011	7571	7	7	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0012	7574	7	0	3	4	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0013	7571	7	0	0	7	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0014	7572	7	0	7	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0015	7573	7	6	0	0	1	0	copy fasta	OR2C3	chr1	247519677	247541440