JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2C3_chr1_247519677_247541440	0/0	t0016	7572	6	0	5	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0017	7573	6	0	0	6	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0018	7540	4	3	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	1/0	t0019	7547	4	3	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0020	7573	4	0	3	0	1	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0021	7542	4	4	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0022	7572	4	1	1	0	2	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0023	7572	4	4	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0024	7571	4	1	2	0	1	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0025	7566	4	4	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0026	7544	4	0	3	0	1	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0027	7573	3	0	0	0	2	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0028	7572	3	2	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0029	7566	3	3	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0030	7572	2	0	0	2	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0031	7573	2	0	0	2	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0032	7574	2	0	1	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0033	7540	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0034	7572	2	0	0	0	0	2	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0035	7571	2	0	0	2	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0036	7573	2	0	0	1	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0037	7574	2	0	0	0	1	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0038	7545	2	0	0	2	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0039	7542	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0040	7573	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0041	7573	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0042	7571	2	0	0	2	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0043	7544	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0044	7578	2	2	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0045	7544	2	0	0	0	0	2	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0046	7573	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0047	7574	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0048	7571	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0049	7566	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0050	7573	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0051	7573	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0052	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0053	7542	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0054	7572	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0055	7572	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0056	7573	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0057	7574	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0058	7574	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0059	7574	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0060	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0061	7573	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0062	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0063	7572	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0064	7575	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0065	7574	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440