JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2C3_chr1_247519677_247541440	0/0	t0066	7574	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0067	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0068	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0069	7572	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0070	7572	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0071	7574	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0072	7544	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0073	7543	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0074	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0075	7573	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0076	7570	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0077	7571	1	0	0	0	0	1	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0078	7577	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0079	7577	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0080	7578	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0081	7572	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0082	7572	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0083	7542	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0084	7541	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0085	7571	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0086	7570	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0087	7573	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0088	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0089	7571	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0090	7571	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0091	7572	1	0	0	1	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0092	7573	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0093	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0094	7542	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0095	7572	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0096	7566	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0097	7574	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0098	7540	1	0	1	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0099	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0100	7547	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0101	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0102	7573	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0103	7545	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0104	7542	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2C3_chr1_247519677_247541440	0/0	t0105	7549	1	1	0	0	0	0	copy fasta	OR2C3	chr1	247519677	247541440
OR2F1_chr7_143949844_143969360	1/1	t0001	3876	158	19	31	73	8	25	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0002	3879	62	11	12	35	0	4	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0003	3877	40	2	7	30	1	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0004	3877	33	0	1	31	0	1	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0005	3878	10	0	2	6	0	2	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0006	3879	10	10	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0007	3879	9	6	2	0	1	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0008	3880	5	5	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0009	3879	5	5	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0010	3876	5	0	0	5	0	0	copy fasta	OR2F1	chr7	143949844	143969360