JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2F1_chr7_143949844_143969360	0/0	t0011	3879	4	3	1	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0012	3876	4	4	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0013	3878	4	0	3	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0014	3877	4	4	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0015	3876	4	0	2	0	0	2	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0016	3877	3	3	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0017	3879	3	3	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0018	3876	3	0	1	0	0	2	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0019	3876	3	0	0	3	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0020	3877	3	0	0	0	0	3	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0021	3880	2	2	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0022	3877	2	2	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0023	3877	2	0	0	2	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0024	3876	2	0	0	0	0	2	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0025	3877	2	0	0	2	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0026	3876	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0027	3877	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0028	3877	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0029	3880	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0030	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0031	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0032	3879	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0033	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0034	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0035	3879	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0036	3877	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0037	3879	1	0	1	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0038	3876	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0039	3876	1	0	1	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0040	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0041	3875	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0042	3875	1	0	0	1	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0043	3879	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0044	3878	1	1	0	0	0	0	copy fasta	OR2F1	chr7	143949844	143969360
OR2F1_chr7_143949844_143969360	0/0	t0045	3876	1	0	0	0	0	1	copy fasta	OR2F1	chr7	143949844	143969360
OR2H1_chr6_29452155_29469328	0/1	t0001	2104	201	54	34	97	3	12	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0002	2104	137	18	24	68	2	25	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0003	2104	80	1	20	39	9	11	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0004	2104	10	10	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0005	2104	3	3	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0006	2104	3	0	0	3	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0007	2101	3	3	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0008	2104	2	0	0	2	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0009	2104	2	0	0	2	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0010	2104	2	1	1	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0011	2104	2	2	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0012	2104	2	0	0	2	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0013	2104	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0014	2104	1	0	1	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0015	2057	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328