JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2H1_chr6_29452155_29469328	0/0	t0016	2104	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0017	2104	1	0	0	1	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H1_chr6_29452155_29469328	0/0	t0018	2104	1	1	0	0	0	0	copy fasta	OR2H1	chr6	29452155	29469328
OR2H2_chr6_29580121_29595500	0/0	t0001	2123	160	44	34	55	6	21	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0002	2123	124	11	19	73	9	12	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0003	2123	97	14	15	65	0	3	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/1	t0004	2123	36	4	7	16	1	7	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0005	2123	12	10	0	1	0	1	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0006	2123	11	1	0	9	0	1	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0007	2123	3	0	3	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0008	2123	3	3	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0009	2123	2	2	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0010	2123	2	0	0	0	0	2	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0011	2123	2	0	2	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0012	2123	1	0	1	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0013	2123	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0014	2123	1	0	0	1	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0015	2123	1	0	0	0	0	1	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0016	2123	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0017	2123	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0018	2123	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0019	2123	1	0	1	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2H2_chr6_29580121_29595500	0/0	t0020	2123	1	1	0	0	0	0	copy fasta	OR2H2	chr6	29580121	29595500
OR2I1P_chr6_29545407_29562773	0/1	t0001	4053	113	11	23	59	4	15	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0002	4056	95	41	7	45	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0003	4056	77	10	15	45	0	7	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0004	4054	66	1	15	37	7	6	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0005	4056	32	2	8	15	2	5	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0006	4056	18	13	4	0	1	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0007	4055	10	10	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0008	4056	10	0	0	9	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0009	4054	7	0	3	0	1	3	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0010	4056	5	0	4	0	1	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0011	4054	4	3	1	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0012	4053	3	0	0	3	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0013	4056	3	0	0	3	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0014	4055	2	2	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0015	4054	2	0	0	2	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0016	4053	2	0	0	0	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0017	4056	2	0	0	0	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0018	4054	2	0	0	0	0	2	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0019	4054	1	0	0	0	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0020	4054	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0021	4054	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0022	4053	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0023	4053	1	0	1	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0024	4053	1	0	0	0	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0025	4053	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0026	4053	1	0	1	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0027	4053	1	0	1	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773