JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2I1P_chr6_29545407_29562773	0/0	t0028	4056	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0029	4056	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0030	4056	1	0	0	0	0	1	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0031	4056	1	0	0	1	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0032	4056	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0033	4054	1	0	1	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2I1P_chr6_29545407_29562773	0/0	t0034	4054	1	1	0	0	0	0	copy fasta	OR2I1P	chr6	29545407	29562773
OR2J1_chr6_29094490_29107701	0/0	t0001	1373	270	35	49	148	10	28	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/1	t0002	1373	107	53	12	30	3	8	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0003	1373	39	8	5	17	0	9	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0004	1373	7	0	0	7	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0005	1373	6	0	5	0	0	1	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0006	1369	5	0	4	0	1	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0007	1373	4	0	0	4	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0008	1373	2	1	1	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0009	1373	2	1	1	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0010	1373	1	0	0	1	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0011	1373	1	0	1	0	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J1_chr6_29094490_29107701	0/0	t0012	1373	1	0	0	1	0	0	copy fasta	OR2J1	chr6	29094490	29107701
OR2J2_chr6_29165907_29180811	0/0	t0001	1454	156	34	19	88	6	9	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/1	t0002	1450	138	8	28	72	7	22	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0003	1454	85	39	14	24	3	5	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0004	1454	32	4	5	15	0	8	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0005	1450	18	1	5	10	0	2	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0006	1454	4	4	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0007	1454	3	3	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0008	1450	2	0	2	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0009	1450	1	0	1	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0010	1450	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0011	1450	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0012	1454	1	1	0	0	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J2_chr6_29165907_29180811	0/0	t0013	1454	1	0	0	1	0	0	copy fasta	OR2J2	chr6	29165907	29180811
OR2J3_chr6_29103058_29119770	0/0	t0001	2363	140	28	18	81	4	9	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0002	2362	84	1	15	54	2	12	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0003	2360	29	1	5	19	2	2	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0004	2360	29	6	4	13	0	6	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0005	2360	19	17	2	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0006	2363	19	1	5	10	0	3	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/1	t0007	2361	14	4	1	4	1	3	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0008	2362	14	1	5	6	0	2	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0009	2360	13	13	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0010	2361	12	0	2	5	3	2	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0011	2361	8	7	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0012	2363	7	3	4	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0013	2360	6	0	5	0	1	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0014	2362	5	2	3	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0015	2362	5	0	2	1	2	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0016	2360	5	5	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0017	2361	2	0	0	2	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0018	2363	2	1	0	0	0	1	copy fasta	OR2J3	chr6	29103058	29119770