JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2J3_chr6_29103058_29119770	0/0	t0019	2361	2	0	0	2	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0020	2360	2	0	2	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0021	2360	2	0	0	2	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0022	2360	2	1	0	0	0	1	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0023	2362	2	0	1	0	1	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0024	2360	2	0	0	0	0	2	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0025	2360	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0026	2360	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0027	2363	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0028	2362	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0029	2363	1	0	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0030	2363	1	0	0	1	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0031	2363	1	1	0	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0032	2360	1	0	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0033	2363	1	0	0	0	0	1	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0034	2362	1	0	0	1	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0035	2363	1	0	1	0	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2J3_chr6_29103058_29119770	0/0	t0036	2362	1	0	0	1	0	0	copy fasta	OR2J3	chr6	29103058	29119770
OR2K2_chr9_111322229_111335224	1/1	t0001	423	419	86	68	202	18	43	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	t0002	423	8	8	0	0	0	0	copy fasta	OR2K2	chr9	111322229	111335224
OR2K2_chr9_111322229_111335224	0/0	t0003	423	1	0	0	0	0	1	copy fasta	OR2K2	chr9	111322229	111335224
OR2L13_chr1_248090184_248106163	0/1	t0001	1064	252	23	52	131	8	37	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	1/0	t0002	1064	90	21	11	50	4	3	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0003	1064	32	5	2	24	0	1	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0004	1064	30	27	3	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0005	1064	13	6	2	5	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0006	1064	7	0	7	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0007	1064	5	3	0	1	0	1	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0008	1064	3	3	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0009	1064	2	0	0	2	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0010	1064	1	0	1	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0011	1064	1	0	0	1	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0012	1064	1	1	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0013	1064	1	1	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0014	1064	1	1	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L13_chr1_248090184_248106163	0/0	t0015	1064	1	1	0	0	0	0	copy fasta	OR2L13	chr1	248090184	248106163
OR2L2_chr1_248025070_248047305	1/1	t0001	3362	201	26	46	88	11	28	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0002	3362	58	9	10	35	1	3	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0003	3362	50	4	3	39	0	4	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0004	3362	12	11	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0005	3361	9	9	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0006	3362	9	0	0	9	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0007	3361	8	8	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0008	3357	6	6	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0009	3360	4	3	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0010	3361	3	1	2	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0011	3361	3	3	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0012	3360	3	3	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0013	3360	3	2	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0014	3362	3	0	0	3	0	0	copy fasta	OR2L2	chr1	248025070	248047305