JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2L2_chr1_248025070_248047305	0/0	t0015	3362	2	0	1	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0016	3362	2	0	0	2	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0017	3362	2	2	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0018	3361	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0019	3361	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0020	3361	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0021	3362	1	0	0	0	1	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0022	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0023	3362	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0024	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0025	3362	1	0	0	0	1	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0026	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0027	3362	1	0	0	0	0	1	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0028	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0029	3362	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0030	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0031	3362	1	0	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0032	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0033	3362	1	0	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0034	3362	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0035	3362	1	0	0	1	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0036	3362	1	1	0	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L2_chr1_248025070_248047305	0/0	t0037	3362	1	0	1	0	0	0	copy fasta	OR2L2	chr1	248025070	248047305
OR2L3_chr1_248041836_248068407	0/1	t0001	1854	150	26	40	57	11	15	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0002	1854	67	0	3	57	1	6	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0003	1854	66	5	10	47	2	2	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0004	1854	40	12	2	23	0	3	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0005	1854	31	28	3	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0006	1854	16	14	2	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0007	1854	5	0	0	5	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0008	1857	5	5	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0009	1854	3	0	0	0	0	3	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0010	1854	3	2	1	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	1/0	t0011	1854	2	1	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0012	2211	2	0	0	0	0	2	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0013	1854	1	0	0	1	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0014	1854	1	0	0	0	0	1	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0015	1854	1	0	0	1	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0016	1854	1	0	0	1	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0017	1854	1	1	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0018	1854	1	0	1	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0019	1854	1	1	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L3_chr1_248041836_248068407	0/0	t0020	1857	1	1	0	0	0	0	copy fasta	OR2L3	chr1	248041836	248068407
OR2L5_chr1_248008660_248029276	1/1	t0001	1491	225	24	51	111	12	25	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0002	1491	136	40	11	78	1	6	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0003	1490	12	12	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0004	1491	7	0	5	0	1	1	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0005	1491	4	3	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0006	1491	4	4	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0007	1488	4	1	3	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276