JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2L5_chr1_248008660_248029276	0/0	t0008	1491	3	2	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0009	1491	3	3	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0010	1491	3	0	3	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0011	1491	3	0	0	3	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0012	1491	3	2	1	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0013	1491	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0014	1491	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0015	1491	1	1	0	0	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0016	1491	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2L5_chr1_248008660_248029276	0/0	t0017	1491	1	0	0	1	0	0	copy fasta	OR2L5	chr1	248008660	248029276
OR2M2_chr1_248169821_248186067	1/1	t0001	108	457	98	80	216	17	44	copy fasta	OR2M2	chr1	248169821	248186067
OR2M2_chr1_248169821_248186067	0/0	t0002	108	1	0	0	0	1	0	copy fasta	OR2M2	chr1	248169821	248186067
OR2M3_chr1_248192265_248217925	0/0	t0001	8975	100	10	20	56	4	10	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0002	8975	80	2	13	54	2	9	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	1/0	t0003	8975	53	4	10	34	4	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0004	8975	11	4	2	1	2	2	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0005	8975	10	9	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0006	8975	8	8	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0007	8975	8	0	0	8	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0008	8975	7	0	0	7	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0009	8976	7	6	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0010	8975	7	6	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0011	8974	6	1	5	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0012	8975	5	4	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0013	8975	4	3	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0014	8975	4	0	0	4	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0015	8975	3	0	0	3	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0016	8975	3	0	2	0	1	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0017	8975	3	0	2	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0018	8976	3	3	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0019	8924	3	3	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0020	8976	3	2	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0021	8975	3	0	0	0	0	3	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0022	8975	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0023	8974	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0024	8975	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0025	8975	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0026	8975	2	0	0	0	0	2	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0027	8975	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0028	8980	2	2	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0029	8981	2	1	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0030	8975	2	0	0	2	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0031	8977	2	2	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0032	8974	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0033	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0034	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0035	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0036	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0037	8929	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0038	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925