JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2M3_chr1_248192265_248217925	0/0	t0039	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0040	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0041	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0042	8977	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0043	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0044	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0045	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0046	8922	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0047	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0048	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0049	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0050	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0051	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0052	8976	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0053	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0054	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0055	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0056	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0057	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0058	8975	1	0	0	0	1	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0059	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0060	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0061	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0062	8963	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0063	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0064	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0065	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0066	8976	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0067	8976	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0068	8929	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0069	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0070	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0071	8981	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0072	8977	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0073	8924	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0074	8924	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0075	8977	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0076	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0077	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0078	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0079	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0080	8975	1	0	0	0	0	1	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0081	8975	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0082	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0083	8974	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/1	t0084	8974	1	0	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0085	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0086	9015	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0087	8978	1	0	1	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0088	8975	1	0	0	1	0	0	copy fasta	OR2M3	chr1	248192265	248217925