JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2M3_chr1_248192265_248217925	0/0	t0089	8975	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M3_chr1_248192265_248217925	0/0	t0090	8919	1	1	0	0	0	0	copy fasta	OR2M3	chr1	248192265	248217925
OR2M4_chr1_248226417_248249679	0/1	t0001	4999	129	27	19	65	4	13	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0002	4999	122	12	23	59	5	23	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	1/0	t0003	4999	69	3	10	50	4	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0004	4999	8	8	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0005	4999	7	6	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0006	4999	7	7	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0007	4999	5	4	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0008	4999	4	0	1	0	1	2	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0009	4999	4	0	3	0	0	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0010	4999	4	0	0	4	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0011	4999	4	4	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0012	4999	4	4	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0013	4999	3	2	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0014	4999	2	0	1	0	0	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0015	4999	2	2	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0016	4999	2	2	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0017	4999	2	1	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0018	4999	2	0	1	1	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0019	4999	2	0	1	0	0	1	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0020	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0021	4999	1	0	0	1	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0022	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0023	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0024	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0025	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0026	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0027	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0028	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0029	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0030	4999	1	0	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0031	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0032	4999	1	0	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0033	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0034	4999	1	1	0	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0035	4999	1	0	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0036	4999	1	0	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2M4_chr1_248226417_248249679	0/0	t0037	4999	1	0	1	0	0	0	copy fasta	OR2M4	chr1	248226417	248249679
OR2S2_chr9_35952108_35963154	1/1	t0001	88	437	87	73	209	16	50	copy fasta	OR2S2	chr9	35952108	35963154
OR2S2_chr9_35952108_35963154	0/0	t0002	88	11	9	1	1	0	0	copy fasta	OR2S2	chr9	35952108	35963154
OR2T10_chr1_248585487_248602700	0/1	t0001	2578	153	10	39	78	10	15	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0002	2581	101	1	6	80	0	14	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	1/0	t0003	2581	11	9	1	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0004	2578	9	0	2	7	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0005	2578	6	0	5	0	0	1	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0006	2581	5	4	1	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0007	2581	3	0	0	3	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0008	2578	3	0	1	0	0	2	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0009	2581	3	0	0	3	0	0	copy fasta	OR2T10	chr1	248585487	248602700