JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T10_chr1_248585487_248602700	0/0	t0010	2576	2	2	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0011	2576	2	2	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0012	2581	2	2	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0013	2576	2	2	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0014	2576	2	2	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0015	2576	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0016	2581	1	0	0	1	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0017	2581	1	0	0	1	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0018	2578	1	0	0	1	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0019	2576	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0020	2578	1	0	0	1	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0021	2581	1	0	0	1	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0022	2578	1	0	1	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0023	2576	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0024	2576	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0025	2576	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T10_chr1_248585487_248602700	0/0	t0026	2578	1	1	0	0	0	0	copy fasta	OR2T10	chr1	248585487	248602700
OR2T11_chr1_248618557_248640091	0/1	t0001	2820	197	8	35	120	7	26	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0002	2818	54	0	5	47	0	2	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0003	2820	8	0	3	0	1	4	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0004	2820	7	7	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0005	2820	6	0	0	6	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0006	2823	4	3	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0007	2820	4	4	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0008	2821	4	4	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0009	2823	2	2	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0010	2820	2	2	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0011	2820	2	2	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0012	2820	2	2	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0013	2818	2	0	0	2	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0014	2823	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0015	2820	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0016	2820	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0017	2820	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0018	2820	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0019	2820	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0020	2820	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0021	2820	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	1/0	t0022	2820	1	0	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0023	2820	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0024	2820	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0025	2820	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0026	2820	1	0	1	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0027	2820	1	0	0	0	0	1	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0028	2823	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0029	2820	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0030	2820	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0031	2821	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0032	2821	1	1	0	0	0	0	copy fasta	OR2T11	chr1	248618557	248640091
OR2T11_chr1_248618557_248640091	0/0	t0033	2836	1	0	0	1	0	0	copy fasta	OR2T11	chr1	248618557	248640091