JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T12_chr1_248285139_248308424	0/0	t0001	4746	147	17	26	78	5	21	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/1	t0002	4748	94	2	14	62	4	11	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	1/0	t0003	4746	54	0	16	32	4	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0004	4746	22	15	4	3	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0005	4743	9	9	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0006	4745	8	8	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0007	4746	8	8	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0008	4746	7	6	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0009	4746	6	6	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0010	4745	5	4	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0011	4745	5	4	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0012	4741	4	4	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0013	4746	3	3	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0014	4746	3	0	0	3	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0015	4742	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0016	4745	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0017	4745	2	1	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0018	4746	2	2	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0019	4746	2	0	0	2	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0020	4746	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0021	4746	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0022	4746	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0023	4746	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0024	4746	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0025	4746	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0026	4748	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0027	4746	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0028	4748	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0029	4746	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0030	4746	1	0	0	0	1	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0031	4746	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0032	4745	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0033	4748	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0034	4748	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0035	4749	1	0	0	0	0	1	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0036	4746	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0037	4748	1	0	0	1	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0038	4748	1	0	1	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0039	4745	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T12_chr1_248285139_248308424	0/0	t0040	4745	1	1	0	0	0	0	copy fasta	OR2T12	chr1	248285139	248308424
OR2T1_chr1_248398048_248413020	0/0	t0001	1153	85	6	29	33	7	10	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0002	1148	60	56	4	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0003	1148	46	2	15	27	1	1	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0004	1153	24	0	1	18	0	5	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0005	1153	23	22	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0006	1132	10	0	4	6	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0007	1148	4	3	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0008	1153	4	3	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0009	1153	2	1	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0010	1148	2	2	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020