JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T1_chr1_248398048_248413020	0/0	t0011	1153	1	0	0	1	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0012	1132	1	0	0	0	0	1	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0013	1153	1	0	1	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0014	1153	1	0	0	0	0	1	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0015	1153	1	0	0	1	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T1_chr1_248398048_248413020	0/0	t0016	1153	1	1	0	0	0	0	copy fasta	OR2T1	chr1	248398048	248413020
OR2T27_chr1_248644838_248660528	0/1	t0001	183	308	24	62	165	14	42	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0002	183	24	6	6	6	2	4	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	1/0	t0003	183	22	20	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0004	182	13	13	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0005	180	4	4	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0006	183	3	2	0	1	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0007	182	2	1	1	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0008	182	2	2	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0009	183	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0010	183	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0011	182	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0012	183	1	0	0	0	0	1	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0013	182	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T27_chr1_248644838_248660528	0/0	t0014	182	1	1	0	0	0	0	copy fasta	OR2T27	chr1	248644838	248660528
OR2T29_chr1_248551912_248567772	0/1	t0001	1690	168	10	46	82	10	19	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0002	1691	82	4	5	61	0	12	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0003	1694	12	5	2	3	0	2	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0004	1691	8	8	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0005	1691	3	3	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0006	1687	3	3	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0007	1690	2	0	2	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0008	1694	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0009	1690	2	0	0	2	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0010	1691	2	0	0	2	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0011	1687	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0012	1687	2	1	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0013	1694	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0014	1687	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0015	1687	2	2	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0016	1691	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0017	1691	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0018	1691	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0019	1690	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0020	1690	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0021	1690	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0022	1690	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0023	1691	1	0	0	0	0	1	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0024	1691	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0025	1691	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0026	1691	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0027	1691	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0028	1687	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0029	1690	1	0	1	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0030	1684	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772