Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASAH2_chr10_50179861_50256516	0/0	t0045	2618	2	0	0	2	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0046	2613	2	1	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0047	2604	2	1	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0048	2615	2	0	0	1	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0049	2613	2	2	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0050	2606	2	0	1	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0051	2617	2	0	0	0	0	2	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0052	2609	2	2	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0053	2617	2	0	0	1	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0054	2613	2	0	0	2	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0055	2617	2	2	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0056	2610	2	0	0	2	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0057	2621	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0058	2617	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0059	2611	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0060	2617	1	0	0	0	1	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0061	2619	1	0	0	0	1	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0062	2617	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/1	t0063	2613	1	0	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0064	2613	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0065	2616	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0066	2612	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0067	2610	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0068	2608	1	0	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0069	2602	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0070	2618	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0071	2617	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0072	2616	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0073	2616	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0074	2615	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0075	2614	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0076	2612	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0077	2612	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0078	2612	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0079	2612	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0080	2611	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0081	2610	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0082	2610	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0083	2610	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0084	2609	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0085	2609	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0086	2602	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0087	2612	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0088	2614	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0089	2614	1	0	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0090	2611	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0091	2610	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0092	2608	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0093	2607	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0094	2606	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516