JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T29_chr1_248551912_248567772	0/0	t0031	1688	1	0	0	1	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0032	1690	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0033	1687	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T29_chr1_248551912_248567772	0/0	t0034	1687	1	1	0	0	0	0	copy fasta	OR2T29	chr1	248551912	248567772
OR2T2_chr1_248440637_248460725	0/0	t0001	2431	136	10	35	67	6	18	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0002	2431	78	1	7	55	3	12	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0003	2431	17	5	4	5	1	2	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0004	2431	14	6	2	5	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0005	2431	13	0	0	13	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0006	2429	9	0	0	9	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0007	2458	7	7	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0008	2431	7	0	7	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0009	2431	4	4	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0010	2431	3	0	1	0	2	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0011	2431	3	3	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0012	2431	3	3	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0013	2431	2	0	0	2	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0014	2431	2	2	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0015	2431	2	0	0	2	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/1	t0016	2431	2	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0017	2361	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0018	2458	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0019	2431	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0020	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0021	2431	1	0	0	0	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0022	2431	1	0	0	0	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0023	2431	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0024	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0025	2431	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0026	2431	1	0	0	0	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0027	2431	1	0	0	0	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0028	2431	1	0	0	0	1	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0029	2431	1	0	0	0	0	1	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0030	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0031	2431	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0032	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0033	2431	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0034	2431	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0035	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0036	2681	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0037	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0038	2431	1	0	0	1	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0039	2431	1	0	0	0	1	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0040	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0041	2431	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0042	2431	1	1	0	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T2_chr1_248440637_248460725	0/0	t0043	2476	1	0	1	0	0	0	copy fasta	OR2T2	chr1	248440637	248460725
OR2T33_chr1_248264917_248282976	0/0	t0001	3154	185	54	29	83	2	17	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/1	t0002	3154	96	1	15	65	4	10	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	1/0	t0003	3156	61	4	15	35	4	2	copy fasta	OR2T33	chr1	248264917	248282976