JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T33_chr1_248264917_248282976	0/0	t0004	3154	12	0	0	12	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0005	3155	8	8	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0006	3157	7	6	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0007	3155	6	5	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0008	3154	6	5	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0009	3154	4	3	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0010	3154	4	4	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0011	3155	2	2	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0012	3154	2	2	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0013	3156	2	2	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0014	3155	2	1	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0015	3154	1	1	0	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0016	3155	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0017	3154	1	0	0	0	0	1	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0018	3154	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0019	3154	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0020	3154	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0021	3156	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0022	3156	1	0	1	0	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T33_chr1_248264917_248282976	0/0	t0023	3154	1	0	0	1	0	0	copy fasta	OR2T33	chr1	248264917	248282976
OR2T35_chr1_248631356_248650278	0/0	t0001	1723	201	9	42	105	10	35	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0002	1719	43	0	5	36	0	2	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0003	1723	19	0	4	14	0	1	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0004	1719	6	6	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0005	1723	6	5	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0006	1721	3	0	0	3	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0007	1723	3	2	1	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	1/0	t0008	1986	3	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0009	1723	3	3	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0010	1721	2	0	2	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0011	1723	2	0	2	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0012	1723	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0013	1719	2	2	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0014	1719	2	0	0	2	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0015	1986	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0016	1986	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0017	1724	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0018	1723	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0019	1723	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0020	1986	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0021	1723	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0022	1723	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0023	1719	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0024	1723	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0025	1719	1	1	0	0	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T35_chr1_248631356_248650278	0/0	t0026	1702	1	0	0	1	0	0	copy fasta	OR2T35	chr1	248631356	248650278
OR2T5_chr1_248483589_248496113	0/0	t0001	1578	144	5	36	75	10	18	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0002	1576	67	1	7	52	0	7	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0003	1582	32	12	2	13	3	2	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0004	1578	7	0	4	0	1	2	copy fasta	OR2T5	chr1	248483589	248496113