JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T5_chr1_248483589_248496113	0/0	t0005	1579	6	0	0	5	0	1	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0006	1575	6	6	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0007	1576	5	0	0	5	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0008	1575	5	4	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0009	1575	3	3	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0010	1576	2	0	0	2	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0011	1578	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0012	1582	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0013	1576	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0014	1578	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0015	1578	1	0	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0016	1582	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0017	1575	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0018	1579	1	0	0	1	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0019	1575	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0020	1575	1	0	1	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T5_chr1_248483589_248496113	0/0	t0021	1575	1	1	0	0	0	0	copy fasta	OR2T5	chr1	248483589	248496113
OR2T6_chr1_248370746_248396811	0/0	t0001	3744	106	6	24	54	8	14	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0002	3744	94	1	18	62	4	9	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0003	3744	70	1	14	45	4	6	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0004	3743	14	12	2	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0005	3743	14	12	2	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0006	3744	12	12	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0007	3743	10	10	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0008	3743	9	8	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0009	3744	9	0	1	8	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0010	3744	8	3	1	4	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0011	3743	7	6	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0012	3744	4	0	0	4	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0013	3742	4	3	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0014	3743	4	4	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0015	3743	4	4	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0016	3744	4	4	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0017	3744	3	0	3	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0018	3743	2	2	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0019	3743	2	2	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0020	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0021	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0022	3744	1	0	0	0	0	1	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0023	3744	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0024	3742	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0025	3742	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0026	3744	1	0	0	0	0	1	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0027	3744	1	0	0	0	0	1	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/1	t0028	3744	1	0	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0029	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0030	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0031	3743	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0032	3743	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0033	3743	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811