JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2T6_chr1_248370746_248396811	0/0	t0034	3743	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0035	3743	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0036	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0037	3744	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0038	3743	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0039	3743	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0040	3744	1	0	1	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0041	3744	1	0	0	1	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T6_chr1_248370746_248396811	0/0	t0042	3744	1	1	0	0	0	0	copy fasta	OR2T6	chr1	248370746	248396811
OR2T8_chr1_247915252_247928152	0/1	t0001	1484	186	28	35	92	9	21	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0002	1484	168	24	19	106	2	17	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0003	1484	30	25	5	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0004	1484	29	3	19	0	5	2	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0005	1484	5	5	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	1/0	t0006	1484	3	2	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0007	1484	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0008	1484	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0009	1484	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0010	1484	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0011	1484	1	0	0	0	0	1	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0012	1484	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0013	1484	1	0	0	1	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0014	1484	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2T8_chr1_247915252_247928152	0/0	t0015	1484	1	1	0	0	0	0	copy fasta	OR2T8	chr1	247915252	247928152
OR2V1_chr5_181118122_181136169	1/0	t0001	1476	290	65	49	138	13	24	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0002	1476	109	10	28	46	4	21	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0003	1476	10	0	0	10	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0004	1476	7	7	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0005	1476	4	4	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0006	1476	4	4	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0007	1476	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0008	1476	2	2	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0009	1476	1	1	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0010	1476	1	0	1	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0011	1476	1	1	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0012	1476	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/1	t0013	1476	1	0	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0014	1476	1	1	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0015	1476	1	0	0	0	0	1	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0016	1476	1	0	0	0	1	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0017	1476	1	0	0	1	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V1_chr5_181118122_181136169	0/0	t0018	1476	1	1	0	0	0	0	copy fasta	OR2V1	chr5	181118122	181136169
OR2V2_chr5_181142586_181164285	1/1	t0001	3830	54	3	16	15	4	14	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0002	3849	41	0	8	30	1	2	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0003	3853	33	0	10	21	0	2	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0004	3858	13	0	0	13	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0005	3857	13	0	0	8	1	4	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0006	3862	11	0	0	11	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0007	3845	11	0	3	3	3	2	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0008	3816	10	9	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285