JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2V2_chr5_181142586_181164285	0/0	t0009	3815	10	10	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0010	3854	10	0	0	10	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0011	3834	10	9	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0012	3845	9	5	4	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0013	3851	9	5	1	3	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0014	3815	9	0	0	3	2	4	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0015	3841	8	2	4	0	0	2	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0016	3849	7	3	2	0	2	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0017	3847	7	1	1	3	0	2	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0018	3850	7	0	0	7	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0019	3861	7	0	0	4	0	3	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0020	3857	6	2	2	0	1	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0021	3816	5	3	2	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0022	3845	5	0	3	0	1	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0023	3841	5	0	5	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0024	3845	5	0	5	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0025	3853	4	3	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0026	3853	4	1	1	0	1	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0027	3826	4	0	0	4	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0028	3858	3	3	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0029	3841	3	2	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0030	3843	3	0	0	3	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0031	3857	3	0	2	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0032	3816	3	3	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0033	3821	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0034	3856	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0035	3852	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0036	3853	2	0	0	0	1	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0037	3833	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0038	3816	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0039	3816	2	2	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0040	3862	2	0	0	2	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0041	3857	2	0	0	2	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0042	3849	2	0	0	2	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0043	3841	2	0	1	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0044	3854	2	0	0	2	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0045	3849	2	1	0	0	1	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0046	3849	2	0	2	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0047	3829	2	1	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0048	3845	2	0	1	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0049	3854	2	0	0	2	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0050	3847	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0051	3821	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0052	3866	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0053	3863	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0054	3854	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0055	3846	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0056	3849	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0057	3858	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0058	3849	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285