JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2V2_chr5_181142586_181164285	0/0	t0059	3850	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0060	2897	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0061	3846	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0062	3829	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0063	3850	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0064	3863	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0065	3859	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0066	3855	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0067	3851	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0068	3850	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0069	3843	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0070	3843	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0071	3853	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0072	3849	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0073	3829	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0074	3815	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0075	3815	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0076	3816	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0077	3866	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0078	3857	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0079	3852	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0080	3852	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0081	3815	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0082	3845	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0083	3853	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0084	3854	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0085	3865	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0086	3867	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0087	3865	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0088	3860	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0089	3861	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0090	3856	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0091	3857	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0092	3857	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0093	3853	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0094	3853	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0095	3849	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0096	3850	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0097	3849	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0098	3845	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0099	3862	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0100	3858	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0101	3853	1	0	1	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0102	3854	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0103	3842	1	1	0	0	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0104	3830	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0105	3830	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0106	3841	1	0	0	0	0	1	copy fasta	OR2V2	chr5	181142586	181164285
OR2V2_chr5_181142586_181164285	0/0	t0107	3849	1	0	0	1	0	0	copy fasta	OR2V2	chr5	181142586	181164285
OR2Z1_chr19_8716634_8737160	0/1	t0001	811	250	34	51	123	13	28	copy fasta	OR2Z1	chr19	8716634	8737160