JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR2Z1_chr19_8716634_8737160	1/0	t0002	811	153	36	26	73	3	14	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0003	811	20	19	1	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0004	811	6	0	0	6	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0005	811	4	4	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0006	811	2	2	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0007	811	1	1	0	0	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0008	811	1	0	0	1	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR2Z1_chr19_8716634_8737160	0/0	t0009	811	1	0	0	1	0	0	copy fasta	OR2Z1	chr19	8716634	8737160
OR3A1_chr17_3286017_3303360	1/1	t0001	703	386	81	71	170	16	46	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	t0002	701	5	5	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	t0003	703	4	3	1	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	t0004	703	2	0	0	2	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A1_chr17_3286017_3303360	0/0	t0005	703	1	1	0	0	0	0	copy fasta	OR3A1	chr17	3286017	3303360
OR3A2_chr17_3271177_3391308	0/0	t0001	2354	105	12	18	58	5	12	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0002	2354	71	11	6	47	1	6	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	1/0	t0003	2354	27	4	10	0	3	9	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/1	t0004	2354	21	8	7	0	2	3	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0005	2354	14	0	3	9	0	2	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0006	2354	11	0	5	2	0	4	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0007	2354	7	7	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0008	2354	5	5	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0009	2354	5	5	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0010	2354	5	0	2	0	3	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0011	2354	4	4	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0012	2354	3	2	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0013	2354	3	3	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0014	2355	3	2	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0015	2354	3	3	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0016	2354	3	0	3	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0017	2354	2	0	0	2	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0018	2354	2	2	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0019	2354	2	0	0	0	0	2	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0020	2354	2	2	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0021	2354	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0022	2354	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0023	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0024	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0025	2355	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0026	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0027	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0028	2354	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0029	2354	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0030	2354	1	0	0	1	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0031	2355	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0032	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0033	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0034	2354	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0035	2355	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0036	2354	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0037	2355	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308