JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR3A2_chr17_3271177_3391308	0/0	t0038	2354	1	0	0	0	0	1	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0039	2354	1	1	0	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A2_chr17_3271177_3391308	0/0	t0040	2354	1	0	1	0	0	0	copy fasta	OR3A2	chr17	3271177	3391308
OR3A3_chr17_3406370_3429070	0/0	t0001	2853	134	19	22	74	3	16	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0002	2850	92	15	25	27	6	19	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0003	2853	72	2	4	60	1	5	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/1	t0004	2853	14	12	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0005	2853	12	0	8	0	2	2	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0006	2852	11	1	0	10	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0007	2853	10	0	4	6	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0008	2853	6	2	1	3	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0009	2853	6	4	0	2	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0010	2852	6	0	0	6	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0011	2850	6	0	0	6	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0012	2852	5	4	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0013	2852	5	3	1	0	1	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0014	2850	4	1	3	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0015	2853	4	4	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0016	2852	3	2	0	0	0	1	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0017	2852	3	3	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0018	2854	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0019	2827	2	0	0	0	0	2	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0020	2853	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0021	2853	2	0	0	2	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0022	2854	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0023	2852	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0024	2850	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0025	2853	2	0	0	0	0	2	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0026	2854	2	0	0	1	0	1	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0027	2852	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0028	2850	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	1/0	t0029	2853	2	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0030	2850	2	2	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0031	2852	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0032	2853	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0033	2852	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0034	2852	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0035	2852	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0036	2853	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0037	2851	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0038	2853	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0039	2854	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0040	2853	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0041	2853	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0042	2853	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0043	2853	1	0	0	0	1	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0044	2853	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0045	2853	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0046	2853	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0047	2854	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070