JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR3A3_chr17_3406370_3429070	0/0	t0048	2853	1	1	0	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0049	2851	1	0	0	1	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0050	2852	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR3A3_chr17_3406370_3429070	0/0	t0051	2850	1	0	1	0	0	0	copy fasta	OR3A3	chr17	3406370	3429070
OR4A5_chr11_54701832_54712902	1/1	t0001	124	455	86	76	228	18	45	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	t0002	124	5	5	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	t0003	124	3	3	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	t0004	124	2	2	0	0	0	0	copy fasta	OR4A5	chr11	54701832	54712902
OR4A5_chr11_54701832_54712902	0/0	t0005	124	1	0	0	0	0	1	copy fasta	OR4A5	chr11	54701832	54712902
OR4C11_chr11_55597360_55612645	1/1	t0001	1805	207	57	35	86	8	19	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0002	1805	6	2	0	0	0	4	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0003	1805	5	5	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0004	1804	4	4	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0005	1805	3	3	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0006	1805	3	1	1	0	1	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0007	1805	2	1	0	0	1	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0008	1805	2	0	2	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0009	1804	2	2	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0010	1805	1	0	0	0	0	1	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0011	1805	1	1	0	0	0	0	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0012	1805	1	0	0	0	0	1	copy fasta	OR4C11	chr11	55597360	55612645
OR4C11_chr11_55597360_55612645	0/0	t0013	1745	1	0	0	0	0	1	copy fasta	OR4C11	chr11	55597360	55612645
OR4C12_chr11_49976473_49987535	1/1	t0001	134	337	75	59	157	13	31	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	t0002	134	76	19	6	38	4	9	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	t0003	134	4	4	0	0	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	t0004	134	4	0	3	1	0	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C12_chr11_49976473_49987535	0/0	t0005	134	1	0	0	0	1	0	copy fasta	OR4C12	chr11	49976473	49987535
OR4C13_chr11_49947391_49958419	0/0	t0001	100	411	88	73	197	12	41	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	1/0	t0002	100	31	7	5	11	4	3	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	t0003	100	2	2	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C13_chr11_49947391_49958419	0/0	t0004	100	1	1	0	0	0	0	copy fasta	OR4C13	chr11	49947391	49958419
OR4C3_chr11_48319920_48330955	1/1	t0001	128	438	97	76	203	16	44	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	t0002	128	1	0	0	1	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C3_chr11_48319920_48330955	0/0	t0003	128	1	1	0	0	0	0	copy fasta	OR4C3	chr11	48319920	48330955
OR4C6_chr11_55657201_55671096	1/1	t0001	91	218	76	36	74	10	20	copy fasta	OR4C6	chr11	55657201	55671096
OR4D10_chr11_59468315_59484361	0/1	t0001	1547	305	43	59	158	10	34	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	1/0	t0002	1547	71	39	16	12	0	3	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0003	1547	29	3	4	20	0	2	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0004	1547	6	6	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0005	1547	3	0	0	2	0	1	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0006	1547	2	0	2	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0007	1547	2	2	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0008	1547	2	0	0	2	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0009	1547	2	0	1	0	1	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0010	1547	2	0	1	0	1	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0011	1547	2	2	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0012	1547	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0013	1547	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0014	1547	1	0	1	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361
OR4D10_chr11_59468315_59484361	0/0	t0015	1547	1	1	0	0	0	0	copy fasta	OR4D10	chr11	59468315	59484361