JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4D1_chr17_58143384_58164585	0/0	t0001	4196	80	2	20	44	3	11	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0002	4195	48	19	10	9	6	4	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0003	4197	37	0	6	27	0	4	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0004	4194	31	5	7	9	1	9	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0005	4195	18	3	4	8	0	3	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0006	4194	17	10	4	0	1	2	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0007	4195	12	0	2	8	0	2	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0008	4195	11	11	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0009	4196	9	1	1	7	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0010	4195	9	0	7	0	1	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0011	4196	6	2	2	2	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0012	4196	5	3	2	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0013	4194	5	5	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0014	4195	5	0	0	5	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0015	4195	4	4	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0016	4196	4	4	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0017	4197	3	0	1	0	2	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0018	4196	3	0	0	3	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0019	4195	3	3	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0020	4195	3	3	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0021	4196	3	3	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0022	4196	3	2	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0023	4195	2	0	1	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0024	4195	2	0	2	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0025	4196	2	0	0	2	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0026	4197	2	1	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0027	4196	2	0	0	2	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0028	4196	2	1	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0029	4194	2	2	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0030	4194	2	0	0	0	0	2	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0031	4194	2	0	0	0	2	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0032	4195	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0033	4195	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0034	4197	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0035	4196	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0036	4196	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0037	4196	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0038	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0039	4195	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0040	4197	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0041	4195	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0042	4195	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0043	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0044	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0045	4197	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0046	4197	1	0	0	0	1	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0047	4194	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	1/0	t0048	4195	1	0	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0049	4195	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0050	4194	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585