Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABTB3_chr12_107313434_107664642	0/0	t0021	2432	1	0	0	0	0	1	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0022	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0023	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0024	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0025	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0026	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0027	2432	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0028	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0029	2432	1	0	1	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0030	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0031	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0032	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0033	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0034	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0035	2432	1	0	0	1	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0036	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0037	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ABTB3_chr12_107313434_107664642	0/0	t0038	2432	1	1	0	0	0	0	copy fasta	ABTB3	chr12	107313434	107664642
ACAA1_chr3_38117715_38142127	1/1	t0001	425	335	65	60	159	11	38	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	t0002	425	36	20	12	1	1	2	copy fasta	ACAA1	chr3	38117715	38142127
ACAA1_chr3_38117715_38142127	0/0	t0003	425	1	1	0	0	0	0	copy fasta	ACAA1	chr3	38117715	38142127
ACAA2_chr18_49777164_49818533	0/0	t0001	1732	99	12	15	59	2	11	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0002	1730	74	4	14	50	0	6	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0003	1732	44	25	7	7	3	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	1/0	t0004	1733	43	13	13	10	4	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0005	1733	39	0	13	13	5	8	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0006	1733	31	1	0	28	1	1	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/1	t0007	1732	26	5	9	7	2	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0008	1732	12	9	1	0	0	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0009	1731	8	0	1	5	0	2	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0010	1732	8	0	1	0	0	7	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0011	1729	5	0	0	5	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0012	1732	4	0	0	4	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0013	1729	4	3	1	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0014	1731	4	0	0	4	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0015	1731	3	2	0	0	0	1	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0016	1729	3	3	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0017	1733	2	1	0	0	0	1	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0018	1732	2	2	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0019	1732	2	2	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0020	1734	2	0	0	2	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0021	1733	2	2	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0022	1733	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0023	1733	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0024	1732	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0025	1734	1	0	0	1	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0026	1733	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0027	1729	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0028	1729	1	1	0	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533
ACAA2_chr18_49777164_49818533	0/0	t0029	1732	1	0	1	0	0	0	copy fasta	ACAA2	chr18	49777164	49818533