Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASAH2_chr10_50179861_50256516	0/0	t0095	2619	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0096	2617	1	0	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0097	2613	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0098	2612	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0099	2610	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0100	2610	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0101	2607	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0102	2596	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0103	2613	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0104	2613	1	0	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0105	2617	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0106	2612	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0107	2613	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0108	2617	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0109	2620	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0110	2624	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0111	2601	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0112	2597	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0113	2601	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0114	2601	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0115	2601	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0116	2603	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0117	2606	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	t0118	2613	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAP1_chr8_130047104_130448674	1/1	t0001	2870	131	52	20	40	5	12	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0002	2871	58	1	18	31	3	5	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0003	2870	54	0	2	41	3	8	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0004	2870	5	0	5	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0005	2870	5	3	1	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0006	2869	5	5	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0007	2870	4	3	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0008	2870	4	4	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0009	2870	4	0	2	0	1	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0010	2869	3	1	1	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0011	2870	3	2	0	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0012	2870	3	3	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0013	2870	3	1	1	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0014	2870	2	0	1	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0015	2871	2	0	1	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0016	2870	2	0	1	0	1	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0017	2871	2	0	0	2	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0018	2870	2	2	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0019	2869	2	0	0	0	1	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0020	2870	2	0	0	2	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0021	2870	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0022	2870	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0023	2870	1	0	0	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0024	2871	1	0	0	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0025	2870	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0026	2870	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674