JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4D1_chr17_58143384_58164585	0/0	t0051	4197	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0052	4196	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0053	4194	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0054	4195	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0055	4194	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0056	4194	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0057	4194	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/1	t0058	4194	1	0	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0059	4195	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0060	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0061	4197	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0062	4197	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0063	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0064	4197	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0065	4196	1	0	0	0	0	1	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0066	4196	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0067	4197	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0068	4197	1	0	0	1	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0069	4194	1	1	0	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0070	4196	1	0	0	0	1	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0071	4194	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D1_chr17_58143384_58164585	0/0	t0072	4196	1	0	1	0	0	0	copy fasta	OR4D1	chr17	58143384	58164585
OR4D2_chr17_58161982_58176116	1/1	t0001	628	222	13	54	109	15	29	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	t0002	628	110	56	6	44	2	2	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	t0003	628	29	18	3	0	1	7	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	t0004	628	21	6	6	5	0	4	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	t0005	628	3	3	0	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D2_chr17_58161982_58176116	0/0	t0006	628	1	0	1	0	0	0	copy fasta	OR4D2	chr17	58161982	58176116
OR4D9_chr11_59506539_59525703	0/1	t0001	5179	181	37	36	82	8	17	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0002	5180	81	9	19	44	0	9	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0003	5180	16	1	2	8	0	5	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0004	5179	9	9	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0005	5179	7	7	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0006	5179	7	0	0	7	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0007	5179	5	0	2	2	0	1	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0008	5179	5	0	0	5	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0009	5179	4	4	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0010	5179	3	2	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0011	5179	3	3	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0012	5179	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0013	5180	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0014	5179	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0015	5179	2	0	0	2	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0016	5179	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0017	5179	2	1	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0018	5179	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0019	5179	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0020	5179	2	2	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0021	5179	2	1	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0022	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703