JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4D9_chr11_59506539_59525703	0/0	t0023	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0024	5179	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0025	5179	1	0	0	0	1	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0026	5179	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0027	5179	1	0	0	0	1	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	1/0	t0028	5179	1	0	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0029	5179	1	0	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0030	5179	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0031	5179	1	0	0	0	0	1	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0032	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0033	5179	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0034	5179	1	0	0	0	0	1	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0035	5179	1	0	1	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0036	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0037	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0038	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0039	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0040	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0041	5180	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0042	5180	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0043	5180	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0044	5179	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0045	5180	1	0	0	1	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4D9_chr11_59506539_59525703	0/0	t0046	5180	1	1	0	0	0	0	copy fasta	OR4D9	chr11	59506539	59525703
OR4E1_chr14_21662886_21678818	0/1	t0001	2847	127	3	16	90	3	14	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	1/0	t0002	2849	86	8	13	54	4	6	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0003	2846	77	16	16	31	1	13	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0004	3026	22	1	12	3	4	2	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0005	3025	21	19	2	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0006	2848	14	0	10	4	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0007	3025	13	5	3	0	3	2	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0008	2847	8	8	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0009	2847	8	0	0	8	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0010	2848	8	0	0	5	1	2	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0011	3026	5	5	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0012	2848	4	4	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0013	2847	4	4	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0014	2848	4	2	1	0	0	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0015	2848	4	1	2	1	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0016	2849	4	0	2	2	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0017	2847	3	3	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0018	3025	3	3	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0019	2847	3	0	0	3	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0020	2848	3	0	0	3	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0021	3025	3	3	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0022	2847	2	2	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0023	2847	2	2	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0024	2848	2	0	1	0	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0025	3027	2	1	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0026	2849	2	0	0	2	0	0	copy fasta	OR4E1	chr14	21662886	21678818