JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4E1_chr14_21662886_21678818	0/0	t0027	2850	2	0	0	2	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0028	2849	2	0	0	2	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0029	2847	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0030	2845	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0031	2847	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0032	3025	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0033	2847	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0034	3025	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0035	2848	1	0	0	0	1	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0036	2847	1	0	0	0	0	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0037	2847	1	0	0	1	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0038	2848	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0039	3026	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0040	2849	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0041	2849	1	0	0	1	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0042	2849	1	0	0	0	0	1	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0043	3027	1	0	1	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E1_chr14_21662886_21678818	0/0	t0044	2850	1	1	0	0	0	0	copy fasta	OR4E1	chr14	21662886	21678818
OR4E2_chr14_21648835_21672642	0/1	t0001	1914	233	35	31	132	6	28	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	1/0	t0002	1914	95	9	15	59	4	7	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0003	1913	43	21	14	3	4	1	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0004	1914	16	0	11	5	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0005	1913	11	3	3	0	3	2	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0006	1914	9	9	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0007	1915	8	0	2	4	0	2	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0008	1913	7	1	1	5	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0009	1913	6	6	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0010	1914	6	3	2	0	0	1	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0011	1914	3	0	0	3	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0012	1915	3	0	1	2	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0013	1914	3	2	1	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0014	1914	2	0	0	0	0	2	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0015	1914	2	0	1	0	0	1	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0016	1914	1	0	0	0	1	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0017	1913	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0018	1915	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0019	1914	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0020	1914	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0021	1885	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0022	1914	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0023	1913	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0024	1914	1	1	0	0	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0025	1914	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4E2_chr14_21648835_21672642	0/0	t0026	1914	1	0	0	1	0	0	copy fasta	OR4E2	chr14	21648835	21672642
OR4F15_chr15_101807202_101825197	1/1	t0001	1181	163	10	24	106	5	16	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0002	1185	65	18	26	9	2	10	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0003	1181	54	18	6	29	0	1	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0004	1185	21	8	2	1	1	9	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0005	1181	19	0	8	0	5	6	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0006	1185	14	10	3	0	1	0	copy fasta	OR4F15	chr15	101807202	101825197