JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4K13_chr14_20024399_20041038	0/0	t0003	4770	47	2	8	33	1	3	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0004	4770	40	5	7	19	1	8	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0005	4767	23	2	14	2	1	4	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0006	4770	19	18	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0007	4770	14	0	0	14	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/1	t0008	4770	13	0	4	0	1	7	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0009	4770	9	9	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0010	4770	9	0	0	9	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0011	4770	6	6	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0012	4770	4	0	0	4	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0013	4770	4	0	0	3	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0014	4770	4	4	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0015	4769	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0016	4770	3	0	1	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0017	4767	3	0	0	0	0	3	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0018	4770	3	0	1	0	0	2	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0019	4773	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0020	4770	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0021	4770	3	3	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0022	4774	2	1	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0023	4770	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0024	4770	2	1	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0025	4773	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0026	4773	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0027	4771	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0028	4770	2	0	0	1	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0029	4770	2	0	0	2	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0030	4770	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0031	4773	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0032	4770	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0033	4770	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0034	4774	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0035	4770	2	2	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0036	4773	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0037	4774	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0038	4770	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0039	4769	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	1/0	t0040	4770	1	0	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0041	4770	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0042	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0043	4767	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0044	4767	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0045	4773	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0046	4770	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0047	4774	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0048	4770	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0049	4773	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0050	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0051	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0052	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038