JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4K13_chr14_20024399_20041038	0/0	t0053	4773	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0054	4773	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0055	4767	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0056	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0057	4773	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0058	4770	1	0	0	0	1	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0059	4769	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0060	4770	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0061	4773	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0062	4770	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0063	4770	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0064	4774	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0065	4773	1	0	1	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0066	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0067	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0068	4773	1	0	0	0	1	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0069	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0070	4773	1	1	0	0	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0071	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0072	4770	1	0	0	1	0	0	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0073	4770	1	0	0	0	0	1	copy fasta	OR4K13	chr14	20024399	20041038
OR4K14_chr14_20009143_20024307	1/1	t0001	313	303	74	54	135	6	32	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	t0002	313	78	8	16	39	7	8	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	t0003	313	43	4	6	26	1	6	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	t0004	313	12	12	0	0	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	t0005	313	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K14_chr14_20009143_20024307	0/0	t0006	313	1	0	0	1	0	0	copy fasta	OR4K14	chr14	20009143	20024307
OR4K17_chr14_20105739_20127199	0/0	t0001	3948	170	13	33	102	3	19	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	1/0	t0002	3948	95	16	15	51	6	6	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/1	t0003	3948	55	22	15	5	4	8	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0004	3948	22	0	4	17	1	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0005	3948	19	0	4	15	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0006	3948	10	1	0	9	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0007	3948	9	8	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0008	3948	6	6	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0009	3948	4	0	4	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0010	3948	3	0	0	0	0	3	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0011	3948	3	3	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0012	3948	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0013	3948	2	0	0	0	0	2	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0014	3948	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0015	3947	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0016	3948	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0017	3948	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0018	3948	2	2	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0019	3948	2	1	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0020	3948	2	0	2	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0021	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0022	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0023	3948	1	0	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199