JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4K17_chr14_20105739_20127199	0/0	t0024	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0025	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0026	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0027	3948	1	0	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0028	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0029	3948	1	0	0	0	1	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0030	3948	1	0	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0031	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0032	3948	1	0	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0033	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0034	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0035	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0036	3948	1	0	0	0	0	1	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0037	3947	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0038	3947	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0039	3948	1	0	0	0	0	1	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0040	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0041	3948	1	0	0	0	1	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0042	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0043	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0044	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0045	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0046	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0047	3948	1	0	0	1	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0048	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0049	3948	1	1	0	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K17_chr14_20105739_20127199	0/0	t0050	3948	1	0	1	0	0	0	copy fasta	OR4K17	chr14	20105739	20127199
OR4K1_chr14_19925917_19941757	1/1	t0001	404	123	41	22	45	8	5	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	t0002	404	117	5	20	83	6	3	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	t0003	412	11	3	0	6	0	2	copy fasta	OR4K1	chr14	19925917	19941757
OR4K1_chr14_19925917_19941757	0/0	t0004	404	1	1	0	0	0	0	copy fasta	OR4K1	chr14	19925917	19941757
OR4K2_chr14_19870142_19888932	0/0	t0001	7740	29	0	5	24	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	1/0	t0002	7737	9	0	2	4	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0003	7736	9	0	1	7	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0004	7739	9	0	4	1	1	3	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0005	7738	7	0	2	1	3	1	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0006	7739	6	0	0	5	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0007	7737	6	0	0	6	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0008	7740	5	0	1	4	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0009	7739	4	0	0	4	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0010	7739	4	0	1	2	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/1	t0011	7737	4	1	0	0	1	1	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0012	7737	3	0	0	3	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0013	7741	3	3	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0014	7740	3	0	0	3	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0015	7736	3	1	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0016	7738	3	0	2	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0017	7740	3	0	2	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0018	7740	3	0	1	2	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0019	7738	3	0	0	3	0	0	copy fasta	OR4K2	chr14	19870142	19888932