JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
OR4K2_chr14_19870142_19888932	0/0	t0020	7738	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0021	7740	2	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0022	7739	2	1	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0023	7739	2	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0024	7740	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0025	7740	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0026	7738	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0027	7740	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0028	7739	2	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0029	7739	2	0	0	0	2	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0030	7740	2	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0031	7738	2	2	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0032	7739	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0033	7737	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0034	7735	2	0	2	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0035	7739	2	0	0	2	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0036	7740	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0037	7736	1	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0038	7740	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0039	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0040	7738	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0041	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0042	7737	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0043	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0044	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0045	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0046	7738	1	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0047	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0048	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0049	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0050	7738	1	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0051	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0052	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0053	7740	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0054	7740	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0055	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0056	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0057	7739	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0058	7737	1	0	0	0	1	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0059	7739	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0060	7739	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0061	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0062	7740	1	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0063	7737	1	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0064	7739	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0065	8074	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0066	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0067	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0068	7740	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0069	7738	1	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932