JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

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Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4K2_chr14_19870142_19888932	0/0	t0070	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0071	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0072	7740	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0073	7740	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0074	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0075	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0076	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0077	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0078	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0079	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0080	7740	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0081	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0082	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0083	7740	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0084	7737	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0085	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0086	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0087	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0088	8073	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0089	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0090	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0091	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0092	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0093	7740	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0094	7738	1	0	0	0	0	1	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0095	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0096	7738	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0097	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0098	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0099	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0100	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0101	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0102	7737	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0103	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0104	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0105	7740	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0106	7737	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0107	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0108	7737	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0109	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0110	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0111	7737	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0112	7738	1	0	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0113	7738	1	0	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0114	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0115	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0116	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0117	7738	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0118	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0119	7739	1	0	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932