JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4K2_chr14_19870142_19888932	0/0	t0120	7738	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0121	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0122	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0123	7740	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0124	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0125	7738	1	0	0	0	1	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0126	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0127	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0128	7738	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0129	7738	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0130	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0131	7739	1	0	1	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0132	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0133	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0134	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0135	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0136	7739	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0137	7737	1	0	0	0	0	1	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0138	7738	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0139	7737	1	0	0	1	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0140	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4K2_chr14_19870142_19888932	0/0	t0141	7739	1	1	0	0	0	0	copy fasta	OR4K2	chr14	19870142	19888932
OR4M1_chr14_19768504_19788696	1/1	t0001	2552	74	29	15	26	2	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0002	2554	54	0	1	51	0	2	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0003	2554	39	0	9	30	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0004	2552	29	2	8	13	4	2	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0005	2552	21	8	3	8	1	1	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0006	2556	14	4	3	5	0	2	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0007	2552	12	2	4	0	2	4	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0008	2552	4	0	1	3	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0009	2552	4	4	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0010	2552	3	3	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0011	2552	2	2	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0012	2550	2	2	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0013	2556	1	0	0	0	1	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0014	2556	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0015	2556	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0016	2556	1	0	0	0	0	1	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0017	2554	1	0	0	0	0	1	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0018	2552	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0019	2554	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0020	2556	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0021	2552	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0022	2554	1	0	0	0	0	1	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0023	2552	1	0	1	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0024	2552	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0025	2552	1	0	1	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0026	2552	1	0	1	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0027	2554	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0028	2554	1	0	0	1	0	0	copy fasta	OR4M1	chr14	19768504	19788696