Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ASAP1_chr8_130047104_130448674	0/0	t0027	2870	1	0	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0028	2870	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0029	2870	1	0	0	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0030	2870	1	0	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0031	2871	1	0	0	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	t0032	2871	1	0	0	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP2_chr2_9201812_9410678	0/0	t0001	2645	95	24	31	23	2	15	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0002	2645	22	3	9	2	4	4	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0003	2644	22	8	5	3	2	4	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0004	2643	20	18	2	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0005	2644	18	15	3	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0006	2645	12	0	1	9	0	2	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0007	2644	2	2	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0008	2645	2	2	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0009	2643	2	2	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0010	2645	2	0	0	2	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0011	2645	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0012	2645	1	0	1	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0013	2645	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0014	2645	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0015	2645	1	0	0	0	0	1	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0016	2644	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0017	2645	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0018	2645	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0019	2645	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0020	2645	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0021	2645	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0022	2645	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	t0023	2645	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP3_chr1_23423563_23489179	0/1	t0001	1340	166	67	20	56	5	17	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0002	1340	116	8	24	57	10	17	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	1/0	t0003	1340	51	12	15	18	1	4	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0004	1340	5	4	1	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0005	1340	2	0	0	1	0	1	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0006	1340	2	2	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0007	1340	1	0	0	1	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0008	1340	1	0	0	1	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0009	1340	1	1	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	t0010	1340	1	0	0	0	0	1	copy fasta	ASAP3	chr1	23423563	23489179
ASB10_chr7_151170698_151192250	1/0	t0001	390	224	20	38	122	9	34	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/1	t0002	390	135	54	19	52	4	5	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	t0003	392	74	16	19	26	4	9	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	t0004	392	7	4	2	0	1	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	t0005	392	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	t0006	390	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB11_chrX_15276697_15320640	1/1	t0001	1844	140	30	26	64	5	13	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0002	1849	69	3	9	43	2	12	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0003	1848	27	5	13	2	4	3	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0004	1852	9	9	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	t0005	1844	9	3	4	0	2	0	copy fasta	ASB11	chrX	15276697	15320640