JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4M1_chr14_19768504_19788696	0/0	t0029	2554	1	1	0	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M1_chr14_19768504_19788696	0/0	t0030	2552	1	0	1	0	0	0	copy fasta	OR4M1	chr14	19768504	19788696
OR4M2B_chr15_21632909_21643992	0/1	t0001	143	214	34	47	104	4	24	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2B_chr15_21632909_21643992	0/0	t0002	143	1	0	1	0	0	0	copy fasta	OR4M2B	chr15	21632909	21643992
OR4M2_chr15_22075527_22086610	0/0	t0001	143	50	16	4	24	2	4	copy fasta	OR4M2	chr15	22075527	22086610
OR4N2_chr14_19798770_19835253	0/0	t0001	1966	70	6	9	52	1	2	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0002	1966	51	15	14	16	1	5	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0003	1967	30	13	4	7	0	6	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0004	1966	25	0	2	21	0	2	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0005	1966	23	0	3	14	3	3	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	1/0	t0006	1966	20	2	3	14	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0007	1974	7	4	1	1	0	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0008	1966	6	0	0	6	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/1	t0009	1973	6	4	0	0	1	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0010	1967	4	4	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0011	1965	3	3	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0012	1966	3	3	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0013	1966	3	2	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0014	1966	3	2	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0015	1972	2	2	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0016	1973	1	0	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0017	1974	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0018	1966	1	0	0	0	0	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0019	1967	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0020	1973	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0021	1967	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0022	1967	1	0	0	0	0	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0023	1967	1	0	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0024	1972	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0025	1966	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0026	1966	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0027	1966	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0028	1966	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0029	1965	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0030	1966	1	0	0	1	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0031	1966	1	0	0	0	0	1	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0032	1966	1	0	1	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N2_chr14_19798770_19835253	0/0	t0033	1971	1	1	0	0	0	0	copy fasta	OR4N2	chr14	19798770	19835253
OR4N4C_chr15_21646844_21657968	1/0	t0001	175	165	20	36	87	5	16	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/1	t0002	176	41	14	6	15	1	4	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	t0003	175	4	0	4	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	t0004	176	3	3	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	t0005	176	2	2	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4C_chr15_21646844_21657968	0/0	t0006	175	1	1	0	0	0	0	copy fasta	OR4N4C	chr15	21646844	21657968
OR4N4_chr15_22089522_22100862	1/0	t0001	391	29	15	3	7	0	3	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	t0002	390	7	1	0	5	0	1	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	t0003	391	3	3	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	t0004	390	2	1	1	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	t0005	391	2	2	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862
OR4N4_chr15_22089522_22100862	0/0	t0006	391	2	2	0	0	0	0	copy fasta	OR4N4	chr15	22089522	22100862