JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4N5_chr14_20133820_20150471	1/1	t0001	1261	409	75	78	196	13	45	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0002	1259	12	2	0	10	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0003	1261	8	7	1	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0004	1261	5	0	0	5	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0005	1261	3	3	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0006	1261	2	0	1	0	1	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0007	1261	2	2	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0008	1261	2	2	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0009	1261	1	0	0	0	0	1	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0010	1261	1	0	0	1	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4N5_chr14_20133820_20150471	0/0	t0011	1261	1	1	0	0	0	0	copy fasta	OR4N5	chr14	20133820	20150471
OR4P4_chr11_55630113_55645309	0/1	t0001	1148	169	36	31	70	7	24	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	1/0	t0002	1148	22	16	3	0	2	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0003	1148	6	6	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0004	1148	5	0	0	5	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0005	1148	5	5	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0006	1148	5	4	1	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0007	1148	3	1	1	0	1	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0008	1145	2	2	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0009	1148	2	2	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0010	1148	1	1	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0011	1148	1	1	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0012	1148	1	0	0	1	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0013	1148	1	1	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4P4_chr11_55630113_55645309	0/0	t0014	1148	1	1	0	0	0	0	copy fasta	OR4P4	chr11	55630113	55645309
OR4Q3_chr14_19738571_19754469	1/0	t0001	1200	217	41	35	124	6	10	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/1	t0002	1200	35	0	6	27	0	1	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	t0003	1200	14	5	4	0	2	3	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	t0004	1200	4	0	0	4	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	t0005	1196	3	2	1	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	t0006	1200	2	2	0	0	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4Q3_chr14_19738571_19754469	0/0	t0007	1200	1	0	0	1	0	0	copy fasta	OR4Q3	chr14	19738571	19754469
OR4S2_chr11_55643327_55657854	0/0	t0001	1276	147	34	19	70	7	17	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/1	t0002	1276	30	5	4	17	0	3	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	1/0	t0003	1276	23	17	3	0	2	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0004	1276	6	6	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0005	1276	5	5	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0006	1276	3	3	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0007	1276	3	1	1	0	1	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0008	1276	3	3	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0009	1276	2	2	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0010	1276	2	0	0	0	0	2	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0011	1276	1	1	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0012	1276	1	1	0	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0013	1276	1	0	1	0	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR4S2_chr11_55643327_55657854	0/0	t0014	1276	1	0	0	1	0	0	copy fasta	OR4S2	chr11	55643327	55657854
OR51A4_chr11_4937831_4952605	0/1	t0001	3326	111	15	26	58	4	7	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0002	3449	51	0	11	20	3	17	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0003	3449	50	3	12	34	0	1	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0004	3449	46	11	3	31	0	1	copy fasta	OR51A4	chr11	4937831	4952605