JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR51A4_chr11_4937831_4952605	0/0	t0005	3450	45	2	9	23	2	9	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0006	3449	22	14	2	0	2	4	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0007	3326	15	2	8	0	2	3	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0008	3326	13	0	0	13	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0009	3449	9	0	0	6	0	3	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0010	3449	7	6	1	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	1/0	t0011	3452	6	3	2	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0012	3450	4	4	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0013	3326	4	4	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0014	3326	4	4	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0015	3475	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0016	3452	3	0	0	3	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0017	3452	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0018	3449	3	0	0	3	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0019	3449	3	0	0	3	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0020	3448	3	1	2	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0021	3450	3	3	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0022	3322	3	0	0	0	3	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0023	12120	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0024	3449	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0025	3449	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0026	3449	2	0	0	2	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0027	3449	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0028	3449	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0029	3452	2	2	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0030	3326	2	0	0	2	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0031	12120	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0032	3475	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0033	3452	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0034	3449	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0035	3449	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0036	3448	1	0	0	0	0	1	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0037	3449	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0038	3449	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0039	3449	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0040	3450	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0041	3450	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0042	3450	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0043	3451	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0044	3450	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0045	3326	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0046	3327	1	0	1	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0047	3326	1	0	0	1	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0048	3326	1	0	1	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A4_chr11_4937831_4952605	0/0	t0049	3326	1	1	0	0	0	0	copy fasta	OR51A4	chr11	4937831	4952605
OR51A7_chr11_4898783_4914462	1/0	t0001	1248	171	55	30	71	3	11	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0002	1249	133	11	9	110	0	3	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/1	t0003	1248	107	23	31	16	8	28	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0004	1248	19	1	11	0	5	2	copy fasta	OR51A7	chr11	4898783	4914462
OR51A7_chr11_4898783_4914462	0/0	t0005	1248	4	2	2	0	0	0	copy fasta	OR51A7	chr11	4898783	4914462